Escherichia coli O25b:H4 strain B1323-PB_2011 unitig_2

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain B1323-PB_2011, identified by the accession SEVD00000000.1, is a Gram-negative bacterium characterized by its rod shape and presence of flagella, which contributes to its motility. This strain is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments. It typically resides in host-associated habitats, reflecting its adaptation to living in close proximity to host organisms. E. coli O25b:H4 has a mesophilic temperature range, with an optimal growth temperature of 37°C, which coincides with the average human body temperature. This trait suggests its potential role in the human microbiome, where it may be a part of the normal gut flora. The organism is free-living, indicating that it can survive independently in various environments, although it often associates with hosts. The cellular arrangement of E. coli O25b:H4 is primarily in pairs and singles, which can influence its interactions within its environment and with other microorganisms. With a single replicon and a double membrane structure, it exhibits typical characteristics of Gram-negative bacteria. Overall, the traits of Escherichia coli O25b:H4 strain B1323-PB_2011 emphasize its ecological versatility and its potential importance in both host-associated and free-living contexts. Its ability to adapt to various oxygen levels and temperatures highlights its role in diverse biological systems, making it a significant organism for further study in microbiology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain B1323-PB_2011 unitig_2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain B1323-PB_2011 unitig_2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain B1323-PB_2011 unitig_2, whole

Gene Summary

Adenine Count

1292645 bp

Thymine Count

1289889 bp

Guanine Count

1330067 bp

Cytosine Count

1330294 bp

Genome Length

5242971 bp

Protein-coding Genes

4591 genes

Non-Coding Genes

499 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lpxt activity modulator pmrrEWT44_15700Not AvailablePositive3198488 - 31985773465.23
two-component system sensor histidine kinase pmrbEWT44_15705Not AvailableNegative3198553 - 319964440992.8
two-component system response regulator basrEWT44_15710Not AvailableNegative3199654 - 320032224988.3
phosphoethanolamine transferase eptaEWT44_15715Not AvailableNegative3200319 - 320196261674.6
arginine/agmatine antiporterEWT44_15720Not AvailableNegative3202066 - 320340346845.3
helix-turn-helix domain-containing proteinEWT44_15725Not AvailableNegative3203540 - 320430129022.4
arginine decarboxylaseEWT44_15730Not AvailableNegative3204637 - 320690484470.9
transcriptional regulator melrEWT44_15735Not AvailableNegative3207103 - 320801134895.9
alpha-galactosidaseEWT44_15740Not AvailablePositive3208294 - 320964950602.8
duf2238 domain-containing proteinEWT44_15745Not AvailableNegative3209646 - 321029624064.2

Displaying genes 3401 – 3410 of 5101 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.