Escherichia coli O25b:H4 strain B1323-PB_2011 unitig_2

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O25b:H4 strain B1323-PB_2011, identified by the accession SEVD00000000.1, is a Gram-negative bacterium characterized by its rod shape and presence of flagella, which contributes to its motility. This strain is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments. It typically resides in host-associated habitats, reflecting its adaptation to living in close proximity to host organisms. E. coli O25b:H4 has a mesophilic temperature range, with an optimal growth temperature of 37°C, which coincides with the average human body temperature. This trait suggests its potential role in the human microbiome, where it may be a part of the normal gut flora. The organism is free-living, indicating that it can survive independently in various environments, although it often associates with hosts. The cellular arrangement of E. coli O25b:H4 is primarily in pairs and singles, which can influence its interactions within its environment and with other microorganisms. With a single replicon and a double membrane structure, it exhibits typical characteristics of Gram-negative bacteria. Overall, the traits of Escherichia coli O25b:H4 strain B1323-PB_2011 emphasize its ecological versatility and its potential importance in both host-associated and free-living contexts. Its ability to adapt to various oxygen levels and temperatures highlights its role in diverse biological systems, making it a significant organism for further study in microbiology and ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO25b:H4 strain B1323-PB_2011 unitig_2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O25b:H4 strain B1323-PB_2011 unitig_2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O25b:H4 strain B1323-PB_2011 unitig_2, whole

Gene Summary

Adenine Count

1292645 bp

Thymine Count

1289889 bp

Guanine Count

1330067 bp

Cytosine Count

1330294 bp

Genome Length

5242971 bp

Protein-coding Genes

4591 genes

Non-Coding Genes

499 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain amino acid abc transporter permeaseEWT44_07385Not AvailablePositive1482260 - 148299726095.1
l-valine transporter subunit ygahEWT44_07390Not AvailablePositive1482987 - 148332211996.2
multidrug efflux transporter emrab transcriptional repressor emrrEWT44_07395Not AvailablePositive1483413 - 148394320506.6
multidrug efflux mfs transporter periplasmic adaptor subunit emraEWT44_07400Not AvailablePositive1484070 - 148524242724.5
multidrug efflux mfs transporter permease subunit emrbEWT44_07405Not AvailablePositive1485259 - 148679755609.6
2'-5' rna ligaseEWT44_07410Not AvailablePositive1487055 - 148776227861.4
poly(a) polymeraseEWT44_07415Not AvailablePositive1487759 - 148887143146.8
s-ribosylhomocysteine lyaseEWT44_07420Not AvailableNegative1488922 - 148943719444.4
glutamate--cysteine ligaseEWT44_07425Not AvailableNegative1489587 - 149114358272.5
deda family proteinEWT44_07430Not AvailableNegative1491216 - 149164415576.6

Displaying genes 1791 – 1800 of 5101 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.