Escherichia coli strain GEN000185

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain GEN000185 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic lifestyle, allowing it to thrive in both aerobic and anaerobic environments. This strain is motile, possessing flagella that facilitate movement. It typically resides in host-associated habitats, with an optimal growth temperature of 37°C, classifying it as mesophilic. The strain has a single replicon and features a double membrane structure characteristic of Gram-negative bacteria. It has a diverse array of potential hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and various other vertebrates and invertebrates, indicating its widespread ecological presence and adaptability. E. coli strain GEN000185 is associated with numerous health effects, particularly in humans. It is recognized for its role in urinary tract infections (UTIs), gastrointestinal infections, and conditions such as neonatal meningitis, septicemia, and foodborne illnesses. The strain is implicated in serious health issues including hemolytic uremic syndrome (HUS), renal failure, and various types of enteric diseases. Its pathogenicity highlights its potential to cause significant clinical challenges, especially in vulnerable populations. The ecological insight derived from the diverse host range and associated health effects suggests that E. coli strain GEN000185 plays a critical role in both human health and agricultural contexts. Its presence in multiple species indicates its adaptability and potential impact on food safety and public health, emphasizing the need for continued monitoring and research into its pathogenic capabilities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain GEN000185

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain GEN000185
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain GEN000185

Gene Summary

Adenine Count

1313826 bp

Thymine Count

1321775 bp

Guanine Count

1343809 bp

Cytosine Count

1338423 bp

Genome Length

5329909 bp

Protein-coding Genes

4768 genes

Non-Coding Genes

336 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
patatin-like phospholipase rssaEVY21_03740Not AvailableNegative757321 - 75822633041.0
ychj family proteinEVY21_03745Not AvailablePositive758339 - 75879716977.2
formyltetrahydrofolate deformylaseEVY21_03750Not AvailablePositive758847 - 75968931922.6
respiratory nitrate reductase subunit gammaEVY21_03760Not AvailableNegative760334 - 76101125484.9
nitrate reductase molybdenum cofactor assembly chaperoneEVY21_03765Not AvailableNegative761011 - 76172126410.3
nitrate reductase subunit betaEVY21_03770Not AvailableNegative761718 - 76325658069.5
nitrate reductase subunit alphaEVY21_03775Not AvailableNegative763253 - 766996140567.0
nark family nitrate/nitrite mfs transporterEVY21_03780Not AvailableNegative767390 - 76878149682.2
nitrate/nitrite two-component system sensor histidine kinase narxEVY21_03785Not AvailablePositive769120 - 77091667102.0
two-component system response regulator narlEVY21_03790Not AvailablePositive770909 - 77155923928.3

Displaying genes 1041 – 1050 of 5106 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total