Pelagerythrobacter rhizovicinus strain AY-3R

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Erythrobacteraceae

Genus

Pelagerythrobacter

Description

Pelagerythrobacter rhizovicinus strain AY-3R is a notable bacterium characterized by having a single replicon, which indicates a streamlined genomic organization that can be advantageous for efficient replication and stability. The strain is cataloged under the accession number SDPV00000000.1, which serves as a reference for researchers seeking detailed genomic information. As a member of the Pelagerythrobacter genus, this strain is likely to exhibit traits common to marine bacteria, particularly those adapted to aquatic environments. The single replicon may reflect an evolutionary adaptation to its ecological niche, potentially influencing its metabolic capabilities and environmental interactions. The biological and ecological implications of such characteristics suggest that Pelagerythrobacter rhizovicinus strain AY-3R may play a role in the cycling of nutrients in its environment, possibly contributing to the degradation of organic matter in marine ecosystems. The streamlined genomic structure could allow for rapid responses to environmental changes, enhancing its survival and ecological function. Understanding these traits can provide insights into the ecological roles of marine bacteria and their contributions to biogeochemical processes in oceanic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyErythrobacteraceae
GenusPelagerythrobacter
SpeciesPelagerythrobacter rhizovicinus
Strainstrain AY-3R

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelagerythrobacter rhizovicinus strain AY-3R

Gene Summary

Adenine Count

505169 bp

Thymine Count

507103 bp

Guanine Count

997439 bp

Cytosine Count

998039 bp

Genome Length

3007870 bp

Protein-coding Genes

2754 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glsb/yeaq/ymge family stress response membrane proteinETX26_12990Not AvailablePositive2750653 - 27509199104.61
efflux rnd transporter periplasmic adaptor subunitETX26_12995Not AvailablePositive2751129 - 275232841705.6
efflux rnd transporter permease subunitETX26_13000Not AvailablePositive2752333 - 2755800125656.0
duf445 domain-containing proteinETX26_13005Not AvailablePositive2755878 - 275708944178.7
electron transfer flavoprotein subunit alpha/fixb family proteinETX26_13010Not AvailableNegative2757111 - 275804031781.9
electron transfer flavoprotein subunit beta/fixa family proteinETX26_13015Not AvailableNegative2758188 - 275893426547.2
adp-forming succinate--coa ligase subunit betaETX26_13025Not AvailableNegative2759695 - 276089442495.3
3'(2'),5'-bisphosphate nucleotidase cysqETX26_13030Not AvailablePositive2761007 - 276178628010.5
ompa family proteinETX26_13035Not AvailableNegative2761849 - 276253823859.2
hlyc/corc family transporterETX26_13040Not AvailablePositive2762699 - 276399145944.8

Displaying genes 2591 – 2600 of 2816 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.