Pelagerythrobacter rhizovicinus strain AY-3R

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Erythrobacteraceae

Genus

Pelagerythrobacter

Description

Pelagerythrobacter rhizovicinus strain AY-3R is a notable bacterium characterized by having a single replicon, which indicates a streamlined genomic organization that can be advantageous for efficient replication and stability. The strain is cataloged under the accession number SDPV00000000.1, which serves as a reference for researchers seeking detailed genomic information. As a member of the Pelagerythrobacter genus, this strain is likely to exhibit traits common to marine bacteria, particularly those adapted to aquatic environments. The single replicon may reflect an evolutionary adaptation to its ecological niche, potentially influencing its metabolic capabilities and environmental interactions. The biological and ecological implications of such characteristics suggest that Pelagerythrobacter rhizovicinus strain AY-3R may play a role in the cycling of nutrients in its environment, possibly contributing to the degradation of organic matter in marine ecosystems. The streamlined genomic structure could allow for rapid responses to environmental changes, enhancing its survival and ecological function. Understanding these traits can provide insights into the ecological roles of marine bacteria and their contributions to biogeochemical processes in oceanic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyErythrobacteraceae
GenusPelagerythrobacter
SpeciesPelagerythrobacter rhizovicinus
Strainstrain AY-3R

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelagerythrobacter rhizovicinus strain AY-3R

Gene Summary

Adenine Count

505169 bp

Thymine Count

507103 bp

Guanine Count

997439 bp

Cytosine Count

998039 bp

Genome Length

3007870 bp

Protein-coding Genes

2754 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseETX26_10935Not AvailablePositive2328570 - 232971540314.3
giy-yig nuclease family proteinETX26_10940Not AvailableNegative2329763 - 233009212532.2
hypothetical proteinETX26_10945Not AvailableNegative2330234 - 233072517964.0
twin-arginine translocation pathway signalETX26_10950Not AvailablePositive2330804 - 233152025967.9
isoprenylcysteine carboxylmethyltransferase family proteinETX26_10955Not AvailablePositive2331704 - 233214717164.3
hypothetical proteinETX26_10960Not AvailablePositive2332211 - 233276520425.6
l,d-transpeptidaseETX26_10965Not AvailableNegative2332908 - 233436553064.3
dmt family transporterETX26_10970Not AvailablePositive2334526 - 233540730972.8
aconitate hydratase acnaETX26_10975Not AvailablePositive2335570 - 233824296288.0
pep-cterm sorting domain-containing proteinETX26_10980Not AvailableNegative2338328 - 233925429475.8

Displaying genes 2181 – 2190 of 2816 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.