Pelagerythrobacter rhizovicinus strain AY-3R

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Erythrobacteraceae

Genus

Pelagerythrobacter

Description

Pelagerythrobacter rhizovicinus strain AY-3R is a notable bacterium characterized by having a single replicon, which indicates a streamlined genomic organization that can be advantageous for efficient replication and stability. The strain is cataloged under the accession number SDPV00000000.1, which serves as a reference for researchers seeking detailed genomic information. As a member of the Pelagerythrobacter genus, this strain is likely to exhibit traits common to marine bacteria, particularly those adapted to aquatic environments. The single replicon may reflect an evolutionary adaptation to its ecological niche, potentially influencing its metabolic capabilities and environmental interactions. The biological and ecological implications of such characteristics suggest that Pelagerythrobacter rhizovicinus strain AY-3R may play a role in the cycling of nutrients in its environment, possibly contributing to the degradation of organic matter in marine ecosystems. The streamlined genomic structure could allow for rapid responses to environmental changes, enhancing its survival and ecological function. Understanding these traits can provide insights into the ecological roles of marine bacteria and their contributions to biogeochemical processes in oceanic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyErythrobacteraceae
GenusPelagerythrobacter
SpeciesPelagerythrobacter rhizovicinus
Strainstrain AY-3R

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelagerythrobacter rhizovicinus strain AY-3R

Gene Summary

Adenine Count

505169 bp

Thymine Count

507103 bp

Guanine Count

997439 bp

Cytosine Count

998039 bp

Genome Length

3007870 bp

Protein-coding Genes

2754 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanine--d-alanine ligaseETX26_08830Not AvailableNegative1843232 - 184421535165.9
udp-n-acetylmuramate dehydrogenaseETX26_08835Not AvailableNegative1844212 - 184518034005.7
udp-n-acetylmuramate--l-alanine ligaseETX26_08840Not AvailableNegative1845177 - 184659850320.0
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseETX26_08845Not AvailableNegative1846774 - 184794041289.0
cell division protein ftswETX26_08850Not AvailableNegative1847937 - 184916344489.1
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseETX26_08855Not AvailableNegative1849160 - 185050947457.7
phospho-n-acetylmuramoyl-pentapeptide- transferaseETX26_08860Not AvailableNegative1850506 - 185157638580.3
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseETX26_08865Not AvailableNegative1851577 - 185304950503.3
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseETX26_08870Not AvailableNegative1853046 - 185451551440.0
penicillin-binding protein 2ETX26_08875Not AvailableNegative1854512 - 185623361747.2

Displaying genes 1761 – 1770 of 2816 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.