Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Attl | Not Available | Not Available | Positive | 1780702 - 1780716 | Not Available |
| Putative bacteriophage integrase | EQ875_01611 | Not Available | Negative | 1787131 - 1788378 | 47397.2 |
| hypothetical protein | EQ875_01612 | Not Available | Negative | 1788378 - 1788569 | 7452.19 |
| Antirepressor protein | EQ875_01613 | Not Available | Negative | 1788566 - 1788955 | 14468.2 |
| Asch domain protein | EQ875_01614 | Not Available | Negative | 1789048 - 1789698 | 24976.7 |
| hypothetical protein | EQ875_01615 | Not Available | Negative | 1789704 - 1790180 | 17639.7 |
| Hypothetical protein | EQ875_01616 | Not Available | Negative | 1790208 - 1790636 | 16153.7 |
| Dna n-6-adenine-methyltransferase | EQ875_01617 | Not Available | Negative | 1790639 - 1791148 | 18975.3 |
| Hypothetical protein | EQ875_01618 | Not Available | Negative | 1791148 - 1792248 | 41713.7 |
| Dna methylase | EQ875_01619 | Not Available | Negative | 1792311 - 1793834 | 55833.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


