Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00881 | Not Available | Positive | 978064 - 978630 | 21840.7 |
| hypothetical protein | EQ875_00882 | Not Available | Negative | 978843 - 979094 | 9043.61 |
| phenylalanine--trna ligase alpha subunit | EQ875_00883 | Not Available | Positive | 979395 - 980378 | 37280.4 |
| phenylalanine--trna ligase beta subunit | EQ875_00884 | Not Available | Positive | 980398 - 982785 | 86284.5 |
| integration host factor subunit alpha | EQ875_00885 | Not Available | Positive | 983308 - 983604 | 11130.4 |
| succinylglutamate desuccinylase | EQ875_00886 | Not Available | Positive | 983867 - 984898 | 38945.2 |
| vitamin b12 import system permease protein btuc | EQ875_00887 | Not Available | Positive | 984982 - 985977 | 35723.8 |
| vitamin b12 import atp-binding protein btud | EQ875_00888 | Not Available | Positive | 985974 - 986738 | 27824.1 |
| 23s rrna (uracil(747)-c(5))-methyltransferase rlmc | EQ875_00889 | Not Available | Positive | 986837 - 987976 | 42486.2 |
| inner membrane protein yeea | EQ875_00890 | Not Available | Negative | 988030 - 989073 | 40188.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


