Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-cystine uptake protein tcyp | EQ875_00871 | Not Available | Negative | 962184 - 963578 | 48678.5 |
| hypothetical protein | EQ875_00872 | Not Available | Negative | 963908 - 964744 | 30956.8 |
| trna 5-carboxymethoxyuridine methyltransferase | EQ875_00873 | Not Available | Positive | 964867 - 965664 | 30254.6 |
| chromosome partition protein mukf | EQ875_00874 | Not Available | Positive | 965683 - 967005 | 50427.8 |
| chromosome partition protein muke | EQ875_00875 | Not Available | Positive | 966986 - 967735 | 28379.7 |
| chromosome partition protein mukb | EQ875_00876 | Not Available | Positive | 967735 - 972195 | 168815.0 |
| hypothetical protein | EQ875_00877 | Not Available | Negative | 972338 - 973270 | 36273.6 |
| hypothetical protein | EQ875_00878 | Not Available | Positive | 973786 - 974544 | 28943.5 |
| hypothetical protein | EQ875_00879 | Not Available | Positive | 974546 - 977011 | 96125.9 |
| hypothetical protein | EQ875_00880 | Not Available | Positive | 977549 - 977914 | 13836.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


