Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein yghb | EQ875_00861 | Not Available | Negative | 951881 - 952576 | 26055.9 |
| hypothetical protein | EQ875_00862 | Not Available | Negative | 953308 - 954012 | 25851.7 |
| hypothetical protein | EQ875_00863 | Not Available | Positive | 954121 - 954465 | 12845.7 |
| hypothetical protein | EQ875_00864 | Not Available | Negative | 954645 - 955193 | 20814.1 |
| hypothetical protein | EQ875_00865 | Not Available | Positive | 955225 - 957537 | 88318.5 |
| lipid a export atp-binding/permease protein msba | EQ875_00866 | Not Available | Positive | 957681 - 959438 | 64401.2 |
| tetraacyldisaccharide 4'-kinase | EQ875_00867 | Not Available | Positive | 959438 - 960472 | 37990.1 |
| hypothetical protein | EQ875_00868 | Not Available | Positive | 960453 - 960632 | 6686.06 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | EQ875_00869 | Not Available | Positive | 960634 - 961380 | 27764.9 |
| hypothetical protein | EQ875_00870 | Not Available | Negative | 961481 - 961858 | 14468.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


