Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00851 | Not Available | Positive | 940331 - 941221 | 33674.0 |
| hypothetical protein | EQ875_00852 | Not Available | Negative | 941218 - 941718 | 18624.7 |
| putative fkbp-type peptidyl-prolyl cis-trans isomerase fkpa | EQ875_00853 | Not Available | Negative | 941895 - 942368 | 17249.0 |
| ribosomal-protein-serine acetyltransferase | EQ875_00854 | Not Available | Negative | 942425 - 942976 | 20976.6 |
| transcription-repair-coupling factor | EQ875_00855 | Not Available | Negative | 943092 - 946553 | 130897.0 |
| hypothetical protein | EQ875_00856 | Not Available | Negative | 946550 - 947131 | 22441.5 |
| lipoprotein-releasing system transmembrane protein lolc | EQ875_00857 | Not Available | Positive | 947331 - 948539 | 43756.0 |
| lipoprotein-releasing system atp-binding protein lold | EQ875_00858 | Not Available | Positive | 948532 - 949221 | 25396.6 |
| lipoprotein-releasing system transmembrane protein lole | EQ875_00859 | Not Available | Positive | 949221 - 950465 | 45353.5 |
| hypothetical protein | EQ875_00860 | Not Available | Positive | 951016 - 951567 | 19181.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


