Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein activator lpob | EQ875_00841 | Not Available | Positive | 930619 - 931278 | 23987.4 |
| thiamine kinase | EQ875_00842 | Not Available | Positive | 931319 - 932170 | 32525.1 |
| hypothetical protein | EQ875_00843 | Not Available | Positive | 932303 - 932842 | 20686.6 |
| nadh dehydrogenase | EQ875_00844 | Not Available | Positive | 933041 - 934330 | 47312.5 |
| hth-type transcriptional regulator malt | EQ875_00845 | Not Available | Negative | 934392 - 935048 | 25320.8 |
| hypothetical protein | EQ875_00846 | Not Available | Positive | 935229 - 935693 | 17596.2 |
| hypothetical protein | EQ875_00847 | Not Available | Positive | 935847 - 936341 | 16841.4 |
| hypothetical protein | EQ875_00848 | Not Available | Positive | 936401 - 937126 | 26764.6 |
| hypothetical protein | EQ875_00849 | Not Available | Positive | 937154 - 937816 | 24999.0 |
| hypothetical protein | EQ875_00850 | Not Available | Positive | 937819 - 940317 | 92799.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


