Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative nudix hydrolase nudl | EQ875_00831 | Not Available | Negative | 916808 - 917407 | 22679.4 |
| aminodeoxychorismate synthase component 1 | EQ875_00832 | Not Available | Negative | 917472 - 918881 | 52786.4 |
| fumarate hydratase class i, anaerobic | EQ875_00833 | Not Available | Positive | 919044 - 920561 | 54591.6 |
| multidrug resistance protein mdta | EQ875_00834 | Not Available | Positive | 920946 - 921983 | 38082.7 |
| toluene efflux pump periplasmic linker protein ttgd | EQ875_00835 | Not Available | Positive | 921985 - 923079 | 39904.8 |
| cobalt-zinc-cadmium resistance protein czca | EQ875_00836 | Not Available | Positive | 923079 - 926153 | 113475.0 |
| dihydroorotase | EQ875_00837 | Not Available | Negative | 926284 - 927312 | 37582.9 |
| hypothetical protein | EQ875_00838 | Not Available | Negative | 927447 - 929450 | 74404.2 |
| purine nucleoside phosphoramidase | EQ875_00839 | Not Available | Positive | 929684 - 930034 | 13127.2 |
| hypothetical protein | EQ875_00840 | Not Available | Positive | 930157 - 930540 | 13715.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


