Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulatory protein phop | EQ875_00821 | Not Available | Negative | 905529 - 906203 | 25505.7 |
| aspartate/alanine antiporter | EQ875_00822 | Not Available | Negative | 906433 - 908115 | 60499.1 |
| glutaredoxin 1 | EQ875_00823 | Not Available | Negative | 908430 - 908696 | 10032.0 |
| hypothetical protein | EQ875_00824 | Not Available | Positive | 909069 - 910286 | 43867.2 |
| succinate-acetate/proton symporter satp | EQ875_00825 | Not Available | Positive | 910754 - 911341 | 20949.3 |
| hypothetical protein | EQ875_00826 | Not Available | Negative | 911422 - 911739 | 12050.6 |
| hypothetical protein | EQ875_00827 | Not Available | Positive | 911846 - 912277 | 16489.2 |
| urease operon transcriptional activator | EQ875_00828 | Not Available | Negative | 912349 - 913227 | 33212.9 |
| l-serine dehydratase 1 | EQ875_00829 | Not Available | Negative | 913766 - 915127 | 48936.9 |
| serine transporter | EQ875_00830 | Not Available | Negative | 915364 - 916617 | 44994.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


