Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putrescine export system permease protein sapb | EQ875_00801 | Not Available | Negative | 881171 - 882133 | 35815.2 |
| peptide transport periplasmic protein sapa | EQ875_00802 | Not Available | Negative | 882137 - 883756 | 60379.7 |
| psp operon transcriptional activator | EQ875_00803 | Not Available | Negative | 883902 - 884909 | 37952.2 |
| phage shock protein a | EQ875_00804 | Not Available | Positive | 885143 - 885808 | 25376.1 |
| phage shock protein b | EQ875_00805 | Not Available | Positive | 885875 - 886102 | 8752.9 |
| phage shock protein c | EQ875_00806 | Not Available | Positive | 886102 - 886488 | 14657.9 |
| putative protein ycjx | EQ875_00807 | Not Available | Positive | 886738 - 888132 | 53289.1 |
| hypothetical protein | EQ875_00808 | Not Available | Positive | 888132 - 889160 | 38070.1 |
| hth-type transcriptional regulator leuo | EQ875_00809 | Not Available | Positive | 889283 - 890206 | 35180.5 |
| transcriptional regulatory protein tyrr | EQ875_00810 | Not Available | Positive | 890426 - 891967 | 58179.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


