Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-phosphoshikimate 1-carboxyvinyltransferase | EQ875_00791 | Not Available | Positive | 871346 - 872626 | 46244.2 |
| cytidylate kinase | EQ875_00792 | Not Available | Positive | 872909 - 873586 | 24431.2 |
| 30s ribosomal protein s1 | EQ875_00793 | Not Available | Positive | 873711 - 875381 | 60614.9 |
| integration host factor subunit beta | EQ875_00794 | Not Available | Positive | 875470 - 875757 | 10792.0 |
| lipopolysaccharide assembly protein a | EQ875_00795 | Not Available | Positive | 875967 - 876251 | 10447.1 |
| lipopolysaccharide assembly protein b | EQ875_00796 | Not Available | Positive | 876258 - 877427 | 44734.1 |
| orotidine 5'-phosphate decarboxylase | EQ875_00797 | Not Available | Positive | 877653 - 878372 | 25685.0 |
| putrescine export system atp-binding protein sapf | EQ875_00798 | Not Available | Negative | 878478 - 879302 | 30867.0 |
| peptide transport system atp-binding protein sapd | EQ875_00799 | Not Available | Negative | 879299 - 880297 | 37393.4 |
| putrescine export system permease protein sapc | EQ875_00800 | Not Available | Negative | 880297 - 881184 | 32209.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


