Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02598 | Not Available | Negative | 2912808 - 2912999 | 7467.07 |
| hypothetical protein | EQ875_02599 | Not Available | Negative | 2912996 - 2913178 | 7049.87 |
| Pyocin activator prtn family protein | EQ875_02600 | Not Available | Negative | 2913171 - 2913425 | 9821.76 |
| Putative ci repressor | EQ875_02601 | Not Available | Positive | 2913545 - 2914165 | 23390.1 |
| Attr | Not Available | Not Available | Positive | 2914229 - 2914241 | Not Available |
| Hypothetical protein | EQ875_02602 | Not Available | Negative | 2914468 - 2914779 | 11871.3 |
| Toxin | EQ875_02603 | Not Available | Positive | 2914948 - 2915685 | 28359.9 |
| zinc uptake regulation protein | EQ875_02604 | Not Available | Positive | 2915909 - 2916358 | 16864.3 |
| hypothetical protein | EQ875_02605 | Not Available | Positive | 2916389 - 2916850 | 16770.6 |
| Csp | EQ875_02606 | Not Available | Positive | 2917120 - 2917326 | 7435.77 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


