Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic glycerol-3-phosphate dehydrogenase subunit b | EQ875_00751 | Not Available | Negative | 829653 - 830975 | 48851.8 |
| anaerobic glycerol-3-phosphate dehydrogenase subunit a | EQ875_00752 | Not Available | Negative | 830972 - 832633 | 61307.2 |
| hypothetical protein | EQ875_00753 | Not Available | Positive | 832896 - 833171 | 10025.2 |
| hypothetical protein | EQ875_00754 | Not Available | Negative | 833260 - 833814 | 20572.4 |
| hypothetical protein | EQ875_00755 | Not Available | Positive | 833957 - 834631 | 24039.8 |
| hypothetical protein | EQ875_00756 | Not Available | Positive | 834776 - 834964 | 7260.72 |
| hth-type transcriptional regulator metr | EQ875_00757 | Not Available | Negative | 835024 - 835947 | 34866.2 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase | EQ875_00758 | Not Available | Positive | 836162 - 838471 | 86841.4 |
| heat shock protein hslj | EQ875_00759 | Not Available | Negative | 838617 - 839069 | 16135.5 |
| hypothetical protein | EQ875_00760 | Not Available | Negative | 839462 - 841105 | 62114.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


