Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endolytic murein transglycosylase | EQ875_00641 | Not Available | Positive | 693634 - 694647 | 37903.9 |
| thymidylate kinase | EQ875_00642 | Not Available | Positive | 694644 - 695273 | 23040.5 |
| dna polymerase iii subunit delta' | EQ875_00643 | Not Available | Positive | 695274 - 696236 | 35717.1 |
| putative metal-dependent hydrolase ycfh | EQ875_00644 | Not Available | Positive | 696338 - 697117 | 29266.1 |
| pts system glucose-specific eiicba component | EQ875_00645 | Not Available | Positive | 697657 - 699282 | 57824.2 |
| hypothetical protein | EQ875_00646 | Not Available | Positive | 699282 - 699749 | 17564.1 |
| pts system glucose-specific eiicb component | EQ875_00647 | Not Available | Positive | 700325 - 701755 | 50395.9 |
| putative protein ygau | EQ875_00648 | Not Available | Positive | 702098 - 702526 | 15377.9 |
| hypothetical protein | EQ875_00649 | Not Available | Positive | 702573 - 703025 | 15251.8 |
| lysine exporter lyso | EQ875_00650 | Not Available | Negative | 703134 - 704033 | 32473.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


