Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein yhjd | EQ875_00621 | Not Available | Positive | 672079 - 673122 | 37894.6 |
| inosine-5'-monophosphate dehydrogenase | EQ875_00622 | Not Available | Negative | 673239 - 673691 | 16626.9 |
| anaerobic c4-dicarboxylate transporter dcub | EQ875_00623 | Not Available | Positive | 674164 - 675492 | 47654.2 |
| hypothetical protein | EQ875_00624 | Not Available | Negative | 675572 - 675988 | 15728.8 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | EQ875_00625 | Not Available | Negative | 676160 - 676765 | 22458.7 |
| adenosylcobinamide-gdp ribazoletransferase | EQ875_00626 | Not Available | Negative | 676770 - 677573 | 29548.7 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | EQ875_00627 | Not Available | Negative | 677588 - 678616 | 36254.9 |
| bicarbonate transporter bica | EQ875_00628 | Not Available | Negative | 678740 - 680296 | 55253.9 |
| ribonuclease e | EQ875_00629 | Not Available | Negative | 680604 - 683900 | 124484.0 |
| ribosomal large subunit pseudouridine synthase c | EQ875_00630 | Not Available | Positive | 684483 - 685430 | 36010.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


