Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna1(val) (adenine(37)-n6)-methyltransferase | EQ875_00601 | Not Available | Negative | 646730 - 647902 | 44620.6 |
| tryptophan--trna ligase 2 | EQ875_00602 | Not Available | Negative | 647999 - 649012 | 37121.9 |
| hypothetical protein | EQ875_00603 | Not Available | Positive | 649400 - 651340 | 74989.1 |
| energy-coupling factor transporter transmembrane protein ecft | EQ875_00604 | Not Available | Negative | 651423 - 652265 | 31842.1 |
| putative hmp/thiamine import atp-binding protein ykod | EQ875_00605 | Not Available | Negative | 652265 - 653962 | 63097.1 |
| hypothetical protein | EQ875_00606 | Not Available | Negative | 653965 - 654516 | 19693.8 |
| response regulator uvry | EQ875_00607 | Not Available | Positive | 655258 - 655902 | 23919.1 |
| uvrabc system protein c | EQ875_00608 | Not Available | Positive | 655902 - 657755 | 70248.6 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | EQ875_00609 | Not Available | Positive | 657872 - 658432 | 21514.7 |
| Trna-cys | Not Available | Not Available | Positive | 658762 - 658835 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


