Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate aminotransferase | EQ875_00561 | Not Available | Negative | 605084 - 606274 | 43406.9 |
| crotonyl-coa hydratase | EQ875_00562 | Not Available | Negative | 606418 - 607176 | 28541.5 |
| nucleoside permease nupc | EQ875_00563 | Not Available | Negative | 607371 - 608567 | 43535.5 |
| hypothetical protein | EQ875_00564 | Not Available | Negative | 608865 - 610931 | 79024.5 |
| hypothetical protein | EQ875_00565 | Not Available | Negative | 610928 - 612238 | 51054.4 |
| thiamine-phosphate synthase | EQ875_00566 | Not Available | Negative | 612430 - 613041 | 22052.9 |
| hydroxyethylthiazole kinase | EQ875_00567 | Not Available | Negative | 613066 - 613872 | 28353.0 |
| asparagine--trna ligase | EQ875_00568 | Not Available | Negative | 613938 - 615338 | 52619.2 |
| 7-carboxy-7-deazaguanine synthase | EQ875_00569 | Not Available | Negative | 615562 - 616230 | 24594.6 |
| protein mlc | EQ875_00570 | Not Available | Positive | 616460 - 617674 | 44289.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


