Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00551 | Not Available | Positive | 594903 - 596651 | 67007.5 |
| hypothetical protein | EQ875_00552 | Not Available | Positive | 596811 - 597368 | 20572.9 |
| hydroxyacylglutathione hydrolase gloc | EQ875_00553 | Not Available | Positive | 597784 - 598437 | 23838.3 |
| transcriptional regulatory protein uhpa | EQ875_00554 | Not Available | Positive | 598578 - 599186 | 21777.2 |
| signal transduction histidine-protein kinase/phosphatase uhpb | EQ875_00555 | Not Available | Positive | 599186 - 600718 | 57558.9 |
| membrane sensor protein uhpc | EQ875_00556 | Not Available | Positive | 600734 - 602065 | 49526.0 |
| rna polymerase sigma factor rpos | EQ875_00557 | Not Available | Positive | 602320 - 603168 | 32447.0 |
| hypothetical protein | EQ875_00558 | Not Available | Negative | 603165 - 603824 | 25180.9 |
| hypothetical protein | EQ875_00559 | Not Available | Positive | 604126 - 604530 | 14410.6 |
| hypothetical protein | EQ875_00560 | Not Available | Positive | 604735 - 605034 | 11888.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


