Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-3 | EQ875_00541 | Not Available | Positive | 585837 - 586250 | 15691.2 |
| 50s ribosomal protein l35 | EQ875_00542 | Not Available | Positive | 586351 - 586545 | 7296.28 |
| 50s ribosomal protein l20 | EQ875_00543 | Not Available | Positive | 586588 - 586941 | 13476.6 |
| hypothetical protein | EQ875_00544 | Not Available | Positive | 587734 - 587904 | 6322.69 |
| cytochrome c-type protein torc | EQ875_00545 | Not Available | Positive | 587957 - 589138 | 44292.3 |
| trimethylamine-n-oxide reductase | EQ875_00546 | Not Available | Positive | 589156 - 591636 | 93670.3 |
| group 2 truncated hemoglobin yjbi | EQ875_00547 | Not Available | Positive | 591726 - 592178 | 17102.3 |
| putative membrane transporter protein yfca | EQ875_00548 | Not Available | Positive | 592346 - 593125 | 27268.2 |
| hypothetical protein | EQ875_00549 | Not Available | Negative | 593055 - 593921 | 31441.5 |
| hypothetical protein | EQ875_00550 | Not Available | Negative | 594000 - 594491 | 18460.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


