Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylaminoimidazole-succinocarboxamide synthase | EQ875_00491 | Not Available | Negative | 520128 - 521231 | 41679.6 |
| hypothetical protein | EQ875_00492 | Not Available | Negative | 521440 - 522207 | 28136.8 |
| atp-dependent dna helicase pcra | EQ875_00493 | Not Available | Positive | 522500 - 524824 | 89860.4 |
| proton/glutamate-aspartate symporter | EQ875_00494 | Not Available | Negative | 524926 - 526179 | 44037.5 |
| hypothetical protein | EQ875_00495 | Not Available | Positive | 526252 - 526356 | 4021.09 |
| glutathione-dependent formaldehyde-activating enzyme | EQ875_00496 | Not Available | Negative | 526688 - 527308 | 22377.7 |
| nadh dehydrogenase | EQ875_00497 | Not Available | Negative | 527403 - 528626 | 44732.8 |
| nadh dehydrogenase | EQ875_00498 | Not Available | Negative | 528894 - 530105 | 44286.4 |
| putative sulfate transporter | EQ875_00499 | Not Available | Positive | 530864 - 532621 | 63217.7 |
| hypothetical protein | EQ875_00500 | Not Available | Negative | 532742 - 533974 | 43236.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


