Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | EQ875_01660 | Not Available | Positive | 1819705 - 1820274 | 20921.2 |
| Hypothetical protein | EQ875_01661 | Not Available | Positive | 1820276 - 1820893 | 23312.5 |
| Orf35 | EQ875_01662 | Not Available | Positive | 1820904 - 1822094 | 41892.9 |
| Hypothetical protein | EQ875_01663 | Not Available | Positive | 1822151 - 1822486 | 13261.6 |
| Gp20 protein | EQ875_01664 | Not Available | Positive | 1822761 - 1823792 | 40557.5 |
| hypothetical protein | EQ875_01665 | Not Available | Positive | 1823789 - 1823950 | 6078.01 |
| Hypothetical protein | EQ875_01666 | Not Available | Positive | 1824010 - 1825611 | 58341.6 |
| Attr | Not Available | Not Available | Positive | 1825971 - 1825985 | Not Available |
| Attl | Not Available | Not Available | Positive | 2901588 - 2901600 | Not Available |
| Site-specific integrase | EQ875_02577 | Not Available | Positive | 2901764 - 2902825 | 41318.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


