Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna gyrase subunit a | EQ875_00481 | Not Available | Positive | 505856 - 508477 | 97155.3 |
| phosphoserine aminotransferase | EQ875_00482 | Not Available | Positive | 508692 - 509774 | 39778.6 |
| vitamin b12 transport atp-binding protein baca | EQ875_00483 | Not Available | Positive | 509917 - 511665 | 66456.8 |
| outer membrane lipoprotein blc | EQ875_00484 | Not Available | Negative | 511662 - 512252 | 22645.1 |
| hypothetical protein | EQ875_00485 | Not Available | Negative | 512271 - 513443 | 45030.2 |
| response regulator mpra | EQ875_00486 | Not Available | Negative | 513490 - 514158 | 25226.6 |
| hypothetical protein | EQ875_00487 | Not Available | Positive | 514252 - 515412 | 41867.2 |
| trimethylamine-n-oxide reductase | EQ875_00488 | Not Available | Negative | 515735 - 518197 | 92760.9 |
| cytochrome c-type protein torc | EQ875_00489 | Not Available | Negative | 518218 - 519396 | 44140.9 |
| hypothetical protein | EQ875_00490 | Not Available | Negative | 519434 - 519610 | 6605.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


