Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine-specific transport protein | EQ875_00471 | Not Available | Negative | 492280 - 493497 | 43439.9 |
| hypothetical protein | EQ875_00472 | Not Available | Positive | 493841 - 495055 | 45624.9 |
| hypothetical protein | EQ875_00473 | Not Available | Positive | 495342 - 496217 | 31432.8 |
| putrescine transporter pote | EQ875_00474 | Not Available | Positive | 496515 - 497855 | 47738.9 |
| biodegradative arginine decarboxylase | EQ875_00475 | Not Available | Positive | 497926 - 500217 | 85382.4 |
| cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- dehydrase reductase | EQ875_00476 | Not Available | Negative | 500265 - 500555 | 10637.8 |
| ribonucleoside-diphosphate reductase 1 subunit beta | EQ875_00477 | Not Available | Negative | 500552 - 501685 | 43347.2 |
| ribonucleoside-diphosphate reductase 1 subunit alpha | EQ875_00478 | Not Available | Negative | 501732 - 503999 | 85011.9 |
| ubiquinone biosynthesis o-methyltransferase | EQ875_00479 | Not Available | Negative | 504485 - 505195 | 26258.7 |
| hypothetical protein | EQ875_00480 | Not Available | Negative | 505269 - 505412 | 5014.33 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


