Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00461 | Not Available | Positive | 478641 - 479798 | 43946.0 |
| putative oxidoreductase ycik | EQ875_00462 | Not Available | Negative | 479882 - 480643 | 27218.8 |
| putative protease sohb | EQ875_00463 | Not Available | Positive | 480920 - 481981 | 38838.0 |
| protein ycin | EQ875_00464 | Not Available | Negative | 482064 - 482312 | 9315.07 |
| dna topoisomerase 1 | EQ875_00465 | Not Available | Positive | 482897 - 485545 | 98393.4 |
| hypothetical protein | EQ875_00466 | Not Available | Negative | 485654 - 486439 | 30155.5 |
| hypothetical protein | EQ875_00467 | Not Available | Negative | 486515 - 487276 | 28980.2 |
| hth-type transcriptional regulator cysb | EQ875_00468 | Not Available | Positive | 487577 - 488551 | 36097.4 |
| hypothetical protein | EQ875_00469 | Not Available | Positive | 488729 - 489925 | 45839.9 |
| hypothetical protein | EQ875_00470 | Not Available | Negative | 490067 - 492043 | 74985.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


