Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00431 | Not Available | Positive | 447637 - 448032 | 15052.9 |
| inner membrane transporter ygji | EQ875_00432 | Not Available | Negative | 448141 - 449568 | 52127.4 |
| inner membrane transporter ygji | EQ875_00433 | Not Available | Negative | 449729 - 451171 | 52552.8 |
| evolved beta-galactosidase subunit beta | EQ875_00434 | Not Available | Negative | 451279 - 451731 | 17650.7 |
| evolved beta-galactosidase subunit alpha | EQ875_00435 | Not Available | Negative | 451736 - 454837 | 118501.0 |
| hth-type transcriptional regulator lacr | EQ875_00436 | Not Available | Negative | 455147 - 456133 | 36885.2 |
| pp_00426 | EQ875_00437 | Not Available | Positive | 456469 - 456801 | Not Available |
| hypothetical protein | EQ875_00438 | Not Available | Negative | 456905 - 457357 | 16946.4 |
| alcohol dehydrogenase 2 | EQ875_00439 | Not Available | Positive | 457781 - 458929 | 40248.6 |
| hypothetical protein | EQ875_00440 | Not Available | Negative | 459028 - 459213 | 7513.89 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


