Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00411 | Not Available | Positive | 426133 - 426468 | 13034.9 |
| sensor histidine kinase ypda | EQ875_00412 | Not Available | Positive | 426566 - 428212 | 60931.0 |
| transcriptional regulatory protein ypdb | EQ875_00413 | Not Available | Positive | 428231 - 428950 | 27661.4 |
| putative mfs-type transporter yhjx | EQ875_00414 | Not Available | Positive | 429200 - 430411 | 42627.3 |
| l-alanine exporter alae | EQ875_00415 | Not Available | Positive | 430726 - 431178 | 16595.5 |
| acetoacetyl-coa reductase | EQ875_00416 | Not Available | Positive | 431510 - 432250 | 26368.8 |
| acetyl-coa acetyltransferase | EQ875_00417 | Not Available | Positive | 432264 - 433469 | 41541.2 |
| hypothetical protein | EQ875_00418 | Not Available | Positive | 433514 - 433861 | 13199.8 |
| poly(3-hydroxyalkanoate) polymerase subunit phac | EQ875_00419 | Not Available | Positive | 433921 - 435693 | 67404.2 |
| miniconductance mechanosensitive channel mscm | EQ875_00420 | Not Available | Negative | 435782 - 439090 | 126475.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


