Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division coordinator cpob | EQ875_00401 | Not Available | Positive | 417825 - 418559 | 27421.2 |
| quinolinate synthase a | EQ875_00402 | Not Available | Positive | 418727 - 419770 | 37922.5 |
| sensor histidine kinase rcsc | EQ875_00403 | Not Available | Positive | 419941 - 421788 | 69477.0 |
| hypothetical protein | EQ875_00404 | Not Available | Negative | 421831 - 422406 | 20856.3 |
| Trna-ser | Not Available | Not Available | Positive | 422654 - 422741 | Not Available |
| Trna-ser | Not Available | Not Available | Positive | 422767 - 422857 | Not Available |
| hypothetical protein | EQ875_00407 | Not Available | Positive | 423753 - 424316 | 21283.0 |
| hypothetical protein | EQ875_00408 | Not Available | Positive | 424369 - 424680 | 11564.8 |
| protein-export protein secb | EQ875_00409 | Not Available | Positive | 424653 - 425138 | 18498.0 |
| hypothetical protein | EQ875_00410 | Not Available | Negative | 425175 - 425630 | 16971.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


