Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome bd-i ubiquinol oxidase subunit 1 | EQ875_00391 | Not Available | Positive | 409735 - 411321 | 58917.3 |
| cytochrome bd-i ubiquinol oxidase subunit 2 | EQ875_00392 | Not Available | Positive | 411340 - 412476 | 41649.6 |
| cytochrome bd-i ubiquinol oxidase subunit x | EQ875_00393 | Not Available | Positive | 412488 - 412592 | 3995.82 |
| hypothetical protein | EQ875_00394 | Not Available | Positive | 412589 - 412900 | 11294.5 |
| acyl-coa thioester hydrolase ybgc | EQ875_00395 | Not Available | Positive | 413219 - 413626 | 15596.0 |
| protein tolq | EQ875_00396 | Not Available | Positive | 413623 - 414309 | 25272.9 |
| protein tolr | EQ875_00397 | Not Available | Positive | 414312 - 414755 | 15862.2 |
| hypothetical protein | EQ875_00398 | Not Available | Positive | 414766 - 415854 | 40304.1 |
| protein tolb | EQ875_00399 | Not Available | Positive | 415866 - 417215 | 49875.5 |
| peptidoglycan-associated lipoprotein | EQ875_00400 | Not Available | Positive | 417263 - 417808 | 19558.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


