Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01650 | Not Available | Positive | 1810246 - 1810650 | 15669.9 |
| hypothetical protein | EQ875_01651 | Not Available | Positive | 1810910 - 1811110 | 7106.75 |
| Putative small subunit terminase | EQ875_01652 | Not Available | Positive | 1811121 - 1811939 | 30233.6 |
| Putative large subunit terminase | EQ875_01653 | Not Available | Positive | 1811932 - 1813596 | 63115.8 |
| Putative portal protein | EQ875_01654 | Not Available | Positive | 1813596 - 1815674 | 78481.7 |
| Hypothetical protein | EQ875_01655 | Not Available | Positive | 1815707 - 1816426 | 26698.6 |
| Hypothetical protein | EQ875_01656 | Not Available | Positive | 1816505 - 1817491 | 36043.4 |
| Putative major capsid protein | EQ875_01657 | Not Available | Positive | 1817556 - 1818767 | 44766.9 |
| Hypothetical protein | EQ875_01658 | Not Available | Positive | 1818829 - 1819212 | 12770.8 |
| Hypothetical protein | EQ875_01659 | Not Available | Positive | 1819274 - 1819699 | 15516.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


