Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate--trna ligase | EQ875_00381 | Not Available | Positive | 398940 - 400718 | 66055.3 |
| putative transcriptional regulatory protein yebc | EQ875_00382 | Not Available | Positive | 400950 - 401696 | 26408.8 |
| crossover junction endodeoxyribonuclease ruvc | EQ875_00383 | Not Available | Positive | 401713 - 402234 | 18323.4 |
| holliday junction atp-dependent dna helicase ruva | EQ875_00384 | Not Available | Positive | 402404 - 403027 | 22622.4 |
| holliday junction atp-dependent dna helicase ruvb | EQ875_00385 | Not Available | Positive | 403046 - 404056 | 37532.3 |
| n-acetylneuraminate lyase | EQ875_00386 | Not Available | Negative | 404231 - 405133 | 31941.3 |
| putative hth-type transcriptional regulator ybbh | EQ875_00387 | Not Available | Positive | 405457 - 406332 | 31280.4 |
| putative n-acetylmannosamine-6-phosphate 2-epimerase | EQ875_00388 | Not Available | Positive | 406593 - 407300 | 24748.8 |
| n-acetylmannosamine kinase | EQ875_00389 | Not Available | Positive | 407297 - 408175 | 30241.2 |
| hypothetical protein | EQ875_00390 | Not Available | Positive | 408238 - 408705 | 17569.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


