Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp phosphoribosyltransferase | EQ875_00361 | Not Available | Negative | 374123 - 375019 | 33176.9 |
| hypothetical protein | EQ875_00362 | Not Available | Negative | 375436 - 375840 | 15115.5 |
| cyclic di-gmp phosphodiesterase cdgj | EQ875_00363 | Not Available | Negative | 375941 - 377176 | 47406.9 |
| hypothetical protein | EQ875_00364 | Not Available | Positive | 377505 - 378344 | 29739.6 |
| udp-2,3-diacylglucosamine hydrolase | EQ875_00365 | Not Available | Negative | 378410 - 379153 | 28433.8 |
| peptidyl-prolyl cis-trans isomerase b | EQ875_00366 | Not Available | Negative | 379203 - 379697 | 18082.4 |
| cysteine--trna ligase | EQ875_00367 | Not Available | Positive | 379894 - 381273 | 51943.5 |
| hypothetical protein | EQ875_00368 | Not Available | Positive | 381526 - 384180 | 98253.1 |
| glycerophosphodiester phosphodiesterase, periplasmic | EQ875_00369 | Not Available | Positive | 384465 - 385550 | 41290.2 |
| hypothetical protein | EQ875_00370 | Not Available | Negative | 385762 - 386580 | 30719.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


