Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00351 | Not Available | Positive | 365180 - 366817 | 58118.7 |
| thymidine kinase | EQ875_00352 | Not Available | Positive | 366971 - 367549 | 21935.1 |
| dna-binding protein | EQ875_00353 | Not Available | Positive | 367574 - 367786 | 8448.27 |
| histidine biosynthesis bifunctional protein hisie | EQ875_00354 | Not Available | Negative | 367891 - 368511 | 22954.6 |
| imidazole glycerol phosphate synthase subunit hisf | EQ875_00355 | Not Available | Negative | 368508 - 369281 | 28578.2 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | EQ875_00356 | Not Available | Negative | 369291 - 370028 | 26462.5 |
| imidazole glycerol phosphate synthase subunit hish | EQ875_00357 | Not Available | Negative | 370043 - 370669 | 22833.9 |
| histidine biosynthesis bifunctional protein hisb | EQ875_00358 | Not Available | Negative | 370669 - 371739 | 39671.3 |
| histidinol-phosphate aminotransferase | EQ875_00359 | Not Available | Negative | 371755 - 372801 | 38618.5 |
| histidinol dehydrogenase | EQ875_00360 | Not Available | Negative | 372823 - 374118 | 46365.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


