Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase flavoprotein subunit | EQ875_00320 | Not Available | Positive | 331582 - 333348 | 64441.6 |
| succinate dehydrogenase iron-sulfur subunit | EQ875_00321 | Not Available | Positive | 333363 - 334073 | 26380.1 |
| 2-oxoglutarate dehydrogenase e1 component | EQ875_00322 | Not Available | Positive | 334225 - 337047 | 106259.0 |
| dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex | EQ875_00323 | Not Available | Positive | 337079 - 338290 | 44332.6 |
| succinate--coa ligase | EQ875_00324 | Not Available | Positive | 338428 - 339594 | 41286.6 |
| succinate--coa ligase | EQ875_00325 | Not Available | Positive | 339594 - 340466 | 29842.2 |
| high-affinity zinc uptake system membrane protein znub | EQ875_00326 | Not Available | Negative | 340555 - 341340 | 27850.6 |
| zinc import atp-binding protein znuc | EQ875_00327 | Not Available | Negative | 341352 - 342101 | 27546.7 |
| high-affinity zinc uptake system protein znua | EQ875_00328 | Not Available | Positive | 342198 - 343133 | 34700.9 |
| murein dd-endopeptidase mepm | EQ875_00329 | Not Available | Positive | 343136 - 344485 | 50139.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


