Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00310 | Not Available | Negative | 323458 - 323679 | 8115.29 |
| esterase ybff | EQ875_00311 | Not Available | Negative | 323766 - 324527 | 28860.7 |
| negative modulator of initiation of replication | EQ875_00312 | Not Available | Positive | 324618 - 325175 | 20892.5 |
| phosphoglucomutase | EQ875_00313 | Not Available | Positive | 325225 - 326871 | 58957.8 |
| hypothetical protein | EQ875_00314 | Not Available | Negative | 326991 - 327779 | 30996.7 |
| hypothetical protein | EQ875_00315 | Not Available | Positive | 327899 - 328105 | 8041.95 |
| gtp cyclohydrolase 1 type 2 | EQ875_00316 | Not Available | Positive | 328287 - 329045 | 27779.2 |
| citrate synthase | EQ875_00317 | Not Available | Negative | 329163 - 330452 | 48246.6 |
| succinate dehydrogenase cytochrome b556 subunit | EQ875_00318 | Not Available | Positive | 330839 - 331240 | 14421.3 |
| succinate dehydrogenase hydrophobic membrane anchor subunit | EQ875_00319 | Not Available | Positive | 331234 - 331581 | 12937.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


