Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit tau | EQ875_00290 | Not Available | Positive | 297341 - 299443 | 77274.6 |
| nucleoid-associated protein ybab | EQ875_00291 | Not Available | Positive | 299568 - 299897 | 12015.6 |
| recombination protein recr | EQ875_00292 | Not Available | Positive | 299931 - 300503 | 20477.5 |
| hypothetical protein | EQ875_00293 | Not Available | Negative | 300608 - 301171 | 21904.4 |
| hypothetical protein | EQ875_00294 | Not Available | Negative | 301162 - 302049 | 32896.0 |
| chaperone protein htpg | EQ875_00295 | Not Available | Positive | 302239 - 304140 | 72171.9 |
| adenylate kinase | EQ875_00296 | Not Available | Positive | 304277 - 304921 | 23116.7 |
| ferrochelatase | EQ875_00297 | Not Available | Positive | 305207 - 306181 | 36680.0 |
| inosine-guanosine kinase | EQ875_00298 | Not Available | Positive | 306354 - 307658 | 48919.9 |
| asparagine synthetase b | EQ875_00299 | Not Available | Negative | 307736 - 309406 | 62666.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


