Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | EQ875_01640 | Not Available | Positive | 1805370 - 1805957 | 22304.6 |
| hypothetical protein | EQ875_01641 | Not Available | Positive | 1805957 - 1806307 | 13064.4 |
| Hypothetical protein | EQ875_01642 | Not Available | Positive | 1806317 - 1806637 | 12132.0 |
| hypothetical protein | EQ875_01643 | Not Available | Positive | 1806710 - 1807228 | 19357.2 |
| hypothetical protein | EQ875_01644 | Not Available | Positive | 1807225 - 1807566 | 13071.7 |
| Protein of unknown function (duf1364) | EQ875_01645 | Not Available | Positive | 1807611 - 1807949 | 12591.2 |
| Nuclease | EQ875_01646 | Not Available | Positive | 1808166 - 1808633 | 17589.3 |
| hypothetical protein | EQ875_01647 | Not Available | Positive | 1808617 - 1809420 | 30424.5 |
| Hypothetical protein | EQ875_01648 | Not Available | Positive | 1809488 - 1809748 | 8878.9 |
| Putative lysozyme | EQ875_01649 | Not Available | Positive | 1809738 - 1810280 | 19773.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


