Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative multidrug resistance protein emrk | EQ875_00260 | Not Available | Positive | 265167 - 266174 | 36817.4 |
| hypothetical protein | EQ875_00261 | Not Available | Positive | 266186 - 267721 | 56429.8 |
| hypothetical protein | EQ875_00262 | Not Available | Negative | 267718 - 268323 | 22545.2 |
| hypothetical protein | EQ875_00263 | Not Available | Positive | 268467 - 268742 | 10860.0 |
| high-affinity nickel transport protein | EQ875_00264 | Not Available | Negative | 268763 - 269791 | 37709.9 |
| inner membrane protein yeea | EQ875_00265 | Not Available | Negative | 269978 - 270967 | 36898.1 |
| oxygen-insensitive nad(p)h nitroreductase | EQ875_00266 | Not Available | Positive | 271425 - 272078 | 24267.8 |
| hth-type transcriptional regulator dmlr | EQ875_00267 | Not Available | Negative | 272154 - 273092 | 34849.1 |
| hypothetical protein | EQ875_00268 | Not Available | Positive | 273294 - 273449 | 5690.94 |
| hypothetical protein | EQ875_00269 | Not Available | Negative | 273561 - 274127 | 20848.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


