Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphohistidine phosphatase sixa | EQ875_00240 | Not Available | Positive | 246929 - 247402 | 17743.9 |
| hypothetical protein | EQ875_00241 | Not Available | Positive | 247428 - 247790 | 12976.8 |
| endonuclease muts2 | EQ875_00242 | Not Available | Negative | 247885 - 248415 | 20021.2 |
| 50s ribosomal protein l3 glutamine methyltransferase | EQ875_00243 | Not Available | Positive | 248469 - 249401 | 35506.2 |
| 7-cyano-7-deazaguanine synthase | EQ875_00244 | Not Available | Negative | 249524 - 250228 | 25887.8 |
| putative siderophore biosynthesis protein sbna | EQ875_00245 | Not Available | Negative | 250617 - 251705 | 40696.1 |
| dna-binding transcriptional activator decr | EQ875_00246 | Not Available | Positive | 251956 - 252417 | 17592.3 |
| acyl-coa thioesterase 2 | EQ875_00247 | Not Available | Negative | 252494 - 253360 | 32705.2 |
| hypothetical protein | EQ875_00248 | Not Available | Positive | 253495 - 253917 | 15287.3 |
| dna base-flipping protein | EQ875_00249 | Not Available | Negative | 253981 - 254286 | 11532.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


