Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00221 | Not Available | Positive | 225218 - 225652 | 16633.3 |
| cytochrome c biogenesis atp-binding export protein ccma | EQ875_00222 | Not Available | Positive | 226026 - 226676 | 24181.0 |
| heme exporter protein b | EQ875_00223 | Not Available | Positive | 226679 - 227347 | 23818.5 |
| heme exporter protein c | EQ875_00224 | Not Available | Positive | 227573 - 228304 | 27627.2 |
| hypothetical protein | EQ875_00225 | Not Available | Positive | 228312 - 228518 | 7850.78 |
| cytochrome c-type biogenesis protein ccme | EQ875_00226 | Not Available | Positive | 228515 - 228994 | 17589.5 |
| cytochrome c-type biogenesis protein ccmf | EQ875_00227 | Not Available | Positive | 228998 - 230959 | 72378.5 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 229383 - 229493 | Not Available |
| thiol:disulfide interchange protein dsbe | EQ875_00228 | Not Available | Positive | 230971 - 231525 | 20918.4 |
| hypothetical protein | EQ875_00229 | Not Available | Positive | 231522 - 232046 | 19683.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


