Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal recognition particle receptor ftsy | EQ875_00211 | Not Available | Positive | 214720 - 216306 | 59546.7 |
| flagellum site-determining protein ylxh | EQ875_00212 | Not Available | Positive | 216299 - 217186 | 32094.2 |
| rna polymerase sigma factor flia | EQ875_00213 | Not Available | Positive | 217173 - 217901 | 27355.7 |
| chemotaxis protein chey | EQ875_00214 | Not Available | Positive | 217945 - 218328 | 14490.8 |
| protein phosphatase chez | EQ875_00215 | Not Available | Positive | 218365 - 219087 | 27250.6 |
| hypothetical protein | EQ875_00216 | Not Available | Positive | 219097 - 221400 | 83061.3 |
| chemotaxis response regulator protein-glutamate methylesterase of group 1 operon | EQ875_00217 | Not Available | Positive | 221475 - 222728 | 44998.9 |
| sporulation initiation inhibitor protein soj | EQ875_00218 | Not Available | Positive | 222740 - 223516 | 28955.5 |
| hypothetical protein | EQ875_00219 | Not Available | Positive | 223506 - 224705 | 44954.2 |
| chemotaxis protein chew | EQ875_00220 | Not Available | Positive | 224724 - 225218 | 18361.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


