Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar secretion chaperone flis | EQ875_00191 | Not Available | Positive | 194132 - 194527 | 14654.7 |
| anaerobic nitric oxide reductase transcription regulator norr | EQ875_00192 | Not Available | Positive | 194819 - 196264 | 54136.3 |
| adaptive-response sensory-kinase sasa | EQ875_00193 | Not Available | Positive | 196586 - 197599 | 36812.0 |
| regulatory protein atoc | EQ875_00194 | Not Available | Positive | 197603 - 199063 | 54054.4 |
| flagellar hook-basal body complex protein flie | EQ875_00195 | Not Available | Positive | 199171 - 199482 | 11194.3 |
| flagellar m-ring protein | EQ875_00196 | Not Available | Positive | 199521 - 201266 | 63711.3 |
| flagellar motor switch protein flig | EQ875_00197 | Not Available | Positive | 201256 - 202296 | 38355.9 |
| hypothetical protein | EQ875_00198 | Not Available | Positive | 202308 - 203123 | 30510.4 |
| flagellum-specific atp synthase | EQ875_00199 | Not Available | Positive | 203120 - 204433 | 46552.6 |
| hypothetical protein | EQ875_00200 | Not Available | Positive | 204528 - 204980 | 17995.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


