Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar l-ring protein | EQ875_00181 | Not Available | Positive | 182707 - 183486 | 28066.7 |
| flagellar p-ring protein | EQ875_00182 | Not Available | Positive | 183534 - 184619 | 37963.7 |
| peptidoglycan hydrolase flgj | EQ875_00183 | Not Available | Positive | 184638 - 185636 | 36989.5 |
| hypothetical protein | EQ875_00184 | Not Available | Negative | 185693 - 185881 | 6792.14 |
| hypothetical protein | EQ875_00185 | Not Available | Positive | 186138 - 188123 | 70999.1 |
| hypothetical protein | EQ875_00186 | Not Available | Positive | 188137 - 189375 | 45006.2 |
| b-type flagellin | EQ875_00187 | Not Available | Positive | 189632 - 191038 | 48378.2 |
| hypothetical protein | EQ875_00188 | Not Available | Positive | 191184 - 192374 | 45860.0 |
| b-type flagellar hook-associated protein 2 | EQ875_00189 | Not Available | Positive | 192420 - 193808 | 50425.1 |
| hypothetical protein | EQ875_00190 | Not Available | Positive | 193823 - 194122 | 11813.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


