Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02808 | Not Available | Positive | 3138213 - 3138557 | 12797.5 |
| arsenical-resistance protein acr3 | EQ875_02809 | Not Available | Positive | 3138696 - 3139769 | 39238.5 |
| hexose-6-phosphate:phosphate antiporter | EQ875_02810 | Not Available | Positive | 3140082 - 3141482 | 50673.4 |
| putative d,d-dipeptide transport atp-binding protein ddpf | EQ875_02811 | Not Available | Negative | 3141554 - 3142150 | 22557.4 |
| putative d,d-dipeptide transport atp-binding protein ddpd | EQ875_02812 | Not Available | Negative | 3142143 - 3142838 | 25487.8 |
| dipeptide transport system permease protein dppc | EQ875_02813 | Not Available | Negative | 3142825 - 3143622 | 29580.1 |
| hypothetical protein | EQ875_02814 | Not Available | Negative | 3143619 - 3144572 | 35179.5 |
| nickel-binding periplasmic protein | EQ875_02815 | Not Available | Negative | 3144572 - 3146146 | 58766.7 |
| urease accessory protein ured | EQ875_02816 | Not Available | Positive | 3146667 - 3147515 | 32129.6 |
| urease subunit gamma | EQ875_02817 | Not Available | Positive | 3147540 - 3147842 | 11115.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


