Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ser | Not Available | Not Available | Positive | 3112661 - 3112751 | Not Available |
| pts system mannose-specific eiibca component | EQ875_02789 | Not Available | Positive | 3113154 - 3114212 | 36679.9 |
| pts system mannose-specific eiibca component | EQ875_02790 | Not Available | Positive | 3114247 - 3114561 | 11141.5 |
| hth-type transcriptional activator rhar | EQ875_02791 | Not Available | Positive | 3114869 - 3115711 | 32649.8 |
| hypothetical protein | EQ875_02792 | Not Available | Positive | 3115940 - 3118444 | 96386.5 |
| hypothetical protein | EQ875_02793 | Not Available | Positive | 3118693 - 3120360 | 63325.6 |
| dipeptide transport system permease protein dppb | EQ875_02794 | Not Available | Positive | 3120450 - 3121436 | 36621.6 |
| dipeptide transport system permease protein dppc | EQ875_02795 | Not Available | Positive | 3121439 - 3122461 | 36693.3 |
| cytosol aminopeptidase | EQ875_02796 | Not Available | Positive | 3122477 - 3123850 | 49898.8 |
| n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase | EQ875_02797 | Not Available | Positive | 3123865 - 3124791 | 33900.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


