Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00171 | Not Available | Negative | 174686 - 175006 | 11553.4 |
| hypothetical protein | EQ875_00172 | Not Available | Negative | 175130 - 175825 | 25286.6 |
| chemotaxis protein chev | EQ875_00173 | Not Available | Positive | 175918 - 176841 | 34082.3 |
| chemotaxis protein methyltransferase 1 | EQ875_00174 | Not Available | Positive | 177010 - 177834 | 30884.6 |
| flagellar basal body rod protein flgb | EQ875_00175 | Not Available | Positive | 177962 - 178369 | 14340.9 |
| flagellar basal-body rod protein flgc | EQ875_00176 | Not Available | Positive | 178373 - 178792 | 15147.8 |
| hypothetical protein | EQ875_00177 | Not Available | Positive | 178816 - 179547 | 25949.6 |
| flagellar hook protein flge | EQ875_00178 | Not Available | Positive | 179547 - 180884 | 48131.5 |
| flagellar basal-body rod protein flgf | EQ875_00179 | Not Available | Positive | 181141 - 181890 | 27075.3 |
| flagellar basal-body rod protein flgg | EQ875_00180 | Not Available | Positive | 181907 - 182695 | 27942.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


